Dr. Bishesh Khanal

Dr. Bishesh Khanal

Medical Image Analysis|Computer Vision|Natural Language Processing|Low-cost Medical Imaging|Healthcare AI for LMICs

  • Former Executive Director at NAAMII

  • Full-time Research Scientist leading the TOGAI research group at NAAMII

  • Specializes in computer vision and NLP for low-resource settings relevant to Low and Middle-Income Countries (LMICs)

Dr. Bishesh Khanal is a full-time Research Scientist at NAAMII, where he leads the TOGAI research group focused on transforming global health through AI. His research pushes the boundaries of machine learning and artificial intelligence with applications relevant to Low and Middle-Income Countries. At TOGAI, his team develops biomedical computer vision methods for low-cost medical imaging solutions, including smartphone-based diagnostics. They also advance Natural Language Processing for Nepali language to enable chatbots, voice bots, and automated clinical report processing for healthcare applications. Dr. Khanal's work emphasizes clinical translational research projects relevant to resource-constrained settings, bridging cutting-edge AI research with practical healthcare solutions for underserved populations.

Publications

2026
The AI Pyramid A Conceptual Framework for Workforce Capability in the Age of AI
Pre-Prints
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2026
Mapping the potential and limitations of using generative AI technologies to address socio-economic challenges in LMICs
Rachel Adams, Fola Adeleke, Leah Junck, Ayantola Alayande, Aarushi Gupta, Urvashi Aneja, Samuel Segun, Rosalind Parkes-Ratanshi, Selam Abdella, Mark Gaffley, Bishesh Khanal
Nature Publishing Group US
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2025
Transforming healthcare through just, equitable and quality driven artificial intelligence solutions in South Asia
Sushmita Adhikari, Iftikhar Ahmed, Deepak Bajracharya, Bishesh Khanal, Chandrasegarar Solomon, Kapila Jayaratne, Khondaker Abdullah Al Mamum, Muhammad Shamim Hayder Talukder, Sunila Shakya, Suresh Manandhar, Zahid Ali Memon, Moinul Haque Chowdhury, Ihtesham ul Islam, Noor Sabah Rakhshani & M. Imran Khan
npj Digital Medicine (nature)
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2025
Assistive Artificial Intelligence in Epilepsy and Its Impact on Epilepsy Care in Low- and Middle-Income Countries
Nabin Koirala, Shishir Raj Adhikari, Mukesh Adhikari, Taruna Yadav, Abdul Rauf Anwar, Dumitru Ciolac, Bibhusan Shrestha, Ishan Adhikari, Bishesh Khanal, Muthuraman Muthuraman
Brain Sciences (MDPI) 2025
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2025
Multimodal Lead-Specific Modeling of ECG for Low-Cost Pulmonary Hypertension Assessment
Mohammod N. I. Suvon, Shuo Zhou, Prasun C. Tripathi, Wenrui Fan, Samer Alabed, Bishesh Khanal, Venet Osmani, Andrew J. Swift, Chen (Cherise) Chen, Haiping Lu
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2024
NLPineers@ NLU of Devanagari Script Languages 2025: Hate speech detection using ensembling of BERT-based models
Anmol Guragain, Nadika Poudel, Rajesh Piryani, Bishesh Khanal
CHiPSAL: Challenges in Processing South Asian Languages. COLING 2025
Peer Reviewed Workshop articleTOGAI (Transforming Global Health with AI)
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2024
TuneVLSeg: Prompt Tuning Benchmark for Vision-Language Segmentation Models
Asian Conference on Computer Vision (ACCV) 2024
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
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2024
Deep-learning assisted detection and quantification of (oo) cysts of Giardia and Cryptosporidium on smartphone microscopy images
Suprim Nakarmi, Sanam Pudasaini, Safal Thapaliya, Pratima Upretee, Retina Shrestha, Basant Giri, Bhanu Bhakta Neupane, Bishesh Khanal
Machine Learning for Biomedical Imaging (MELBA) 2024
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2024
Investigating the Robustness of Vision Transformers against Label Noise in Medical Image Classification
Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) 2024
Peer Reviewed Conference articleBBMMLL (B Bhattarai Multi-Modal Learning Lab)
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2024
AI-Assisted Cervical Cancer Screening
Kanchan Poudel, Lisasha Poudel, Prabin Raj Shakya, Atit Poudel, Archana Shrestha, Bishesh Khanal
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2024
VLSM-Adapter: Finetuning Vision-Language Segmentation Efficiently with Lightweight Blocks
Medical Image Computing and Computer Assisted Intervention (MICCAI) 2024
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
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2024
How does self-supervised pretraining improve robustness against noisy labels across various medical image classification datasets?
Pre-Prints
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2023
Emerging Avenue of Artificial Intelligence and Ethical Considerations
arXiv preprint arXiv:2308.07706, 2023
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2023
Synthetic Boost: Leveraging Synthetic Data for Enhanced Vision-Language Segmentation in Echocardiography
Simplifying Medical Ultrasound. ASMUS, 2023
Peer Reviewed Workshop articleTOGAI (Transforming Global Health with AI)
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2023
Exploring transfer learning in medical image segmentation using vision-language models
arXiv preprint arXiv:2308.07706, 2023
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2023
FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare
Karim Lekadir, Bishesh Khanal, Martijn Starmans
arXiv preprint arXiv:2309.12325 , 2023
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2023
Improving Medical Image Classification in Noisy Labels Using Only Self-supervised Pretraining
MICCAI Workshop on Data Engineering in Medical Imaging. DEMI, 2023
Peer Reviewed Workshop articleTOGAI (Transforming Global Health with AI)
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2023
M-VAAL: Multimodal Variational Adversarial Active Learning for Downstream Medical Image Analysis Tasks
Bidur Khanal, Binod Bhattarai, Bishesh Khanal, Danail Stoyanov, Cristian A Linte
Annual Conference on Medical Image Understanding and Analysis (MIUA)
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2023
Benchmarking Encoder-Decoder Architectures for Biplanar X-ray to 3D Bone Shape Reconstruction
Neurips, 2023
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
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2023
Investigating the impact of class-dependent label noise in medical image classification
Bidur Khanal, SM Kamrul Hasan, Bishesh Khanal, Cristian A Linte
Medical Imaging 2023: Image Processing, vol. 12463, pp. 728-733. SPIE, (2023)
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
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2023
Fast fetal head compounding from multi-view 3D ultrasound
Robert Wright, Alberto Gomez, Veronika A Zimmer, Nicolas Toussaint, Bishesh Khanal, Jacqueline Matthew, Emily Skelton, Bernhard Kainz, Daniel Rueckert, Joseph V Hajnal, Julia A Schnabel
Medical Image Analysis, (2023) : 102793, 2023
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2022
Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health
Shadi Albarqouni, Spyridon Bakas, Sophia Bano, M Jorge Cardoso, Bishesh Khanal, Bennett Landman, Xiaoxiao Li, Chen Qin, Islem Rekik, Nicola Rieke, Holger Roth, Debdoot Sheet, Daguang Xu
Third MICCAI Workshop, DeCaF 2022, and Second MICCAI Workshop, FAIR 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18 and 22, 2022
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
2022
Challenges of Deep Learning Methods for COVID-19 Detection Using Public Datasets
Md Kamrul Hasan, Md Ashraful Alam, Lavsen Dahal, Md Toufick E Elahi, Shidhartho Roy, Sifat Redwan Wahid, Robert Marti, Bishesh Khanal
Informatics in Medicine Unlocked 30 (2022): 100945.
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2022
COVID-19-related Nepali Tweets Classification in a Low Resource Setting
Rabin Adhikari, Safal Thapaliya, Nirajan Basnet, Samip Poudel, Aman Shakya, Bishesh Khanal
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications (SMM4H), Workshop & Shared Task, COLING (2022), Korea, 2022
Peer Reviewed Workshop articleTOGAI (Transforming Global Health with AI)
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2022
FixMatchSeg: Fixing FixMatch for Semi-Supervised Semantic Segmentation
2022
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2022
Label Geometry Aware Discriminator for Conditional Generative Networks
26th International Conference on Pattern Recognition (ICPR). IEEE. August, 2022
Peer Reviewed Conference article
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2021
COVID-19 control strategies and intervention effects in resource limited settings: a modeling study
Kiran Raj Pandey, Anup Subedee, Bishesh Khanal, Bhagawan Koirala
Plos one 16.6 (2021): e0252570., 2021
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
2021
Machine-Learning-Assisted Analysis of Colorimetric Assays on Paper Analytical Devices
Bidur Khanal, Pravin Pokhrel, Bishesh Khanal, Basant Giri
ACS omega 6.49 (2021): 33837-33845., 2021
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2021
Evaluation and Comparison of Accurate Automated Spinal Curvature Estimation Algorithms with Spinal Anterior-posterior X-Ray Images: The AASCE2019 Challenge
Liansheng Wang, Cong Xie, Yi Lin, Hong-Yu Zhou, Kailin Chen, Dalong Cheng, Florian Dubost, Benjamin Collery, Bidur Khanal, Bishesh Khanal, Rong Tao, Shangliang Xu, Upasana Upadhyay Bharadwaj, Zhusi Zhong, Jie Li, Shuxin Wang, Shuo Li
Medical Image Analysis 72 (2021): 102115., 2021
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2020
Towards automated extraction of 2D standard fetal head planes from 3D ultrasound acquisitions: A clinical evaluation and quality assessment comparison
E Skelton, J Matthew, Y Li, Bishesh Khanal, JJ Cerrolaza Martinez, N Toussaint, C Gupta, C Knight, B Kainz, JV Hajnal, M Rutherford
Radiography 27.2 (2021): 519-526., 2020
Peer Reviewed Journal articleTOGAI (Transforming Global Health with AI)
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2020
Uncertainty Estimation in Deep 2D Echocardiography Segmentation
2020
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2020
Ensemble U-Net model for efficient polyp segmentation
MediaEval (2020)., 2020
Workshop & Challenges
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2019
Complete Fetal Head Compounding from Multi-View 3D Ultrasound
Bishesh Khanal, Robert and Toussaint, Nicolas and Gomez, Alberto and Zimmer, Veronika and Matthew, Jacqueline and Skelton, Emily and, Bishesh Khanal, and Kainz, Bernhard and Reuckert, Daniel and Hajnal, Jo and Schnabel, Julia
Medical Image Computing and Computer Assisted Intervention–MICCAI (2019): 22nd International Conference, Shenzhen, China, (October 13–17, 2019), Proceedings, Part III 22. Springer International Publishing, (2019)., 2019
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
2019
Complete Fetal Head Compounding from Multi-View 3D Ultrasound
Bishesh Khanal, Robert and Toussaint, Nicolas and Gomez, Alberto and Zimmer, Veronika and Matthew, Jacqueline and Skelton, Emily and, Bishesh Khanal, and Kainz, Bernhard and Reuckert, Daniel and Hajnal, Jo and Schnabel, Julia
Medical Image Computing and Computer Assisted Intervention–MICCAI (2019): 22nd International Conference, Shenzhen, China, (October 13–17, 2019), Proceedings, Part III 22. Springer International Publishing, (2019)., 2019
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
2019
Automatic Cobb Angle Detection using Vertebra Detector and Vertebra Corners Regression
Computational Methods and Clinical Applications for Spine Imaging: 6th International Workshop and Challenge, CSI (2019), Shenzhen, China, (October 17, 2019), Proceedings 6. Springer International Publishing (2020)., 2019
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2019
Image Reconstruction in a Manifold of Image Patches: Application to Whole-fetus Ultrasound Imaging
Alberto Gomez, Veronika Zimmer, Nicolas Toussaint, Robert Wright, James R. Clough, Bishesh Khanal, Milou Van Poppel, Emily Skelton, Jackie Matthews, and Julia A. Schnabel
Machine Learning for Medical Image Reconstruction: Second International Workshop, MLMIR (2019), Held in Conjunction with MICCAI (2019), Shenzhen, China, (October 17, 2019), Proceedings. Cham: Springer International Publishing, (2019)., 2019
Peer Reviewed Workshop articleTOGAI (Transforming Global Health with AI)
2019
Towards whole placenta segmentation at late gestation using multi-view ultrasound images
Zimmer, Veronika and Gomez, Alberto and Skelton, Emily and Toussaint, Nicolas and Zhang, Tong and, Bishesh Khanal, and Wright, Robert and Noh, Yohan and Ho, Alison and Matthew, Jacqueline and Schnabel, Julia
Medical Image Computing and Computer Assisted Intervention–MICCAI (2019): 22nd International Conference, Shenzhen, China, (October 13–17, 2019), Proceedings, Part V 22. Springer International Publishing, (2019)., 2019
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
2019
Confident Head Circumference Measurement from Ultrasound with Real-time Feedback for Sonographers
Buddhi Pathak, Samuel and Sinclair, Matthew and, Bishesh Khanal, and Matthew, Jacqueline and Llyod, David and Gomez, Alberto and Toussaint, Nicolas and Robinson, Emma and Kainz, Bernhard
Medical Image Computing and Computer Assisted Intervention–MICCAI (2019): 22nd International Conference, Shenzhen, China, (October 13–17, 2019), Proceedings, Part IV 22. Springer International Publishing, (2019)., 2019
Peer Reviewed Conference articleTOGAI (Transforming Global Health with AI)
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2019
Adapted and Oversegmenting Graphs: Application to Geometric Deep Learning
Alberto Gomez, Veronika A. Zimmer, Bishesh Khanal, Nicolas Toussaint, Julia A. Schnabel
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Dr. Bishesh Khanal